[blast-announce] BLAST+ 2.2.28 release

Mcginnis, Scott (NIH/NLM/NCBI) [E] mcginnis at ncbi.nlm.nih.gov Mon Apr 1 09:05:32 EDT 2013

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March 19, 2013
* 2.2.28 release.
New features:
* Composition based statistics support in rpsblast
* Support for taxonomy data in custom tabular output format
* Support for query coverage and title in custom tabular output format
* blastdbcmd support for batch subsequence retrieval

Improvements:
* Adaptive BATCH_SIZE
* Perform incremental XML output

Bug fixes:
* Formatting of asterix character in XML output
* Segmentation fault on out-of-memory
* Prevented extension of alignment into Ns
* Segmentation fault in DeltaBLAST when used with -remote and -out_ascii_pssm
* Replace tabs with spaces in FASTA deflines
* blastdbcmd displaying internal sequence ID for databases built without -parse_seqid
* blastdbcmd not fetching sequence data for complete sequence ID and -target_only
* blastn missing a hit for small word sizes
* Crash in blastn when it fetches sequence data from Genbank
* DeltaBLAST returning no hits when used with -remote option and searching more than one query
* Initialization problems for indexed megablast
* psiblast problem using -import_search_strategy
* blast_formatter displaying empty query for DeltaBLAST RID
* makeblastdb problem with ASN.1 input
* dustmasker errors with acclist and maskinfo_xml output formats
* blastx reporting of HSPs dependent on -max_target_seqs
* psiblast's display of number of queries in tabular output format
* blastx error when -ungapped and -comp_based_stats F are used

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