Useful Open Sources and Bioinformatics Tools for students

Open Source or Free Bioinformatics Tools

1. HD-CNV (Hotspot Detector for Copy Number Variants) – source
2. bedTools – source
3. PennCNV – source
4. Circos – source
5. FigTree – source

R and R packages

Basic statistics in R

1. ape – source

Other Nifty Free Downloadable Software

1. Notepad ++ - source
2. Mendeley – source
3. JabRef – source

Perl-based tools

1. pedigree-perl (prepares a TeX file) – source

Typesetting, Formatting, Graphing, Images

1. TeXStudio – source
2. Venn Diagram Plotter – source

Databases and Browsers

1. NCBI (general) – source
2. dbVar – source
3. Centre for Genome Dynamics (The Jackson Laboratory) – source
4. UCSC Genome Browser – source

Proprietary Licensed Software

1. Partek Genomics Suite – source

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